PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002068m
Common NameCARUB_v10002068mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 184aa    MW: 21345.5 Da    PI: 6.3051
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002068mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1482.7e-1574131562
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      +++rr+ +NRe+ArrsR RK+  ++eL   v+ L +eN++L ++l++ ++  + + +e
  Carubv10002068m  74 RKQRRMVSNRESARRSRMRKQRHLDELMSQVAWLRSENHQLLDKLNQVSDSNDHVMQE 131
                      689********************************************99988877666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.2E-1670134IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.0772135IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.9E-1273128No hitNo description
PfamPF001704.0E-1374131IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.94E-1374124No hitNo description
CDDcd147029.21E-1975122No hitNo description
PROSITE patternPS0003607792IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MQPNYDSLSL NNMQQQDYFH LNNYYNNLTP STNNNLNLLQ YPQIHQELNL QSPASNNSTT  60
SDDATEGIFV INERKQRRMV SNRESARRSR MRKQRHLDEL MSQVAWLRSE NHQLLDKLNQ  120
VSDSNDHVMQ ENLNLKEENL ELRQVITSMK KLGGGIHEKY PSSSSMDEDF SSITDDPRSH  180
HPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18693RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00512DAPTransfer from AT5G15830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002068m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1178281e-179AK117828.1 Arabidopsis thaliana At5g15830 mRNA for putative bZIP transcription factor AtbZip3, complete cds, clone: RAFL18-02-O03.
GenBankAL3911441e-179AL391144.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F14F8 (ESSA project).
GenBankBT0036831e-179BT003683.1 Arabidopsis thaliana At5g15830 mRNA, complete cds.
GenBankCP0026881e-179CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288751.11e-132basic leucine zipper 43
SwissprotQ9FMC21e-32BZP43_ARATH; Basic leucine zipper 43
TrEMBLR0GXL91e-130R0GXL9_9BRAS; Uncharacterized protein
STRINGXP_006288751.11e-131(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106321532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15830.12e-81basic leucine-zipper 3
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]