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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001689m | ||||||||
Common Name | CARUB_v10001689mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 275aa MW: 30761.6 Da PI: 6.9355 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 109.7 | 1.4e-34 | 45 | 152 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k ltpsdv+k++rlv+pk++ae++ ++++e+++ l++ede+g+sW+++++y+++s++yvltkGW++Fvk+++L+ gD+v F+++ Carubv10001689m 45 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavadnSSSSEKGMLLSFEDETGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRH 138 99*******************************99777889***************************************************98 PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 +++ ++l+++++r+ Carubv10001689m 139 RSDLRRLFIGWRRR 152 8799999****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.9E-41 | 41 | 160 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.23E-31 | 43 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.93E-28 | 44 | 143 | No hit | No description |
PROSITE profile | PS50863 | 14.551 | 45 | 153 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-31 | 45 | 152 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-27 | 45 | 153 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MSVNHYSTDH HHTLLWQQQH HTTDASETAT TTAAWLNDDL KESLFEKSLT PSDVGKLNRL 60 VIPKQHAEKY FPLNAVADNS SSSEKGMLLS FEDETGKSWR FRYSYWNSSQ SYVLTKGWSR 120 FVKDKQLDPG DVVFFQRHRS DLRRLFIGWR RRGQGSSSAV NTSSMAAPSY RQIHHSSTNY 180 SNPPSHSEYS HYGAAVATAG ETHSTPSSSV VAGSSRTLRL FGVNLECQMD DNDGDDSAAA 240 AAAAVESPDG YYGQNMYYYY PHPHNMNIAF TGER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-47 | 42 | 152 | 11 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002688 | 5e-94 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | AB006700 | 5e-94 | AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288431.1 | 0.0 | hypothetical protein CARUB_v10001689mg | ||||
Swissprot | Q9FNI3 | 1e-149 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | R0GWN8 | 0.0 | R0GWN8_9BRAS; Uncharacterized protein | ||||
STRING | AT5G06250.2 | 1e-146 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 1e-124 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001689m |
Entrez Gene | 17883684 |