PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001579m
Common NameCARUB_v10001579mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 299aa    MW: 34003.3 Da    PI: 10.5747
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001579mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84.1e-1819110196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ffkv  +   +++++  +p +fa++++ ++  + +++++  +g sWevk+  +k+++  ++ ++GW++Fv +n L  ++f++F+++g++ f   
  Carubv10001579m  19 FFKVVNSVAISSENMRAIPHDFARKFSDNELLG-KMKIRVHWGSSWEVKI--SKNPRFyFMEKSGWEKFVTDNALGRNEFLTFTHKGKMHF--S 107
                      7777755556666888**********8886655.9***************..******555569********************9998888..5 PP

                      EEE CS
               B3  94 vkv 96 
                      v +
  Carubv10001579m 108 VNI 110
                      554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-1714111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-1914112IPR015300DNA-binding pseudobarrel domain
CDDcd100179.21E-1718110No hitNo description
SMARTSM010197.6E-1819114IPR003340B3 DNA binding domain
PROSITE profilePS5086312.90119114IPR003340B3 DNA binding domain
PfamPF023622.1E-1619110IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-14202296IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.839206298IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-10206295IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-11209298IPR003340B3 DNA binding domain
CDDcd100172.64E-7209294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MACNPEFLKC YEERKQESFF KVVNSVAISS ENMRAIPHDF ARKFSDNELL GKMKIRVHWG  60
SSWEVKISKN PRFYFMEKSG WEKFVTDNAL GRNEFLTFTH KGKMHFSVNI MKQIGKEMLQ  120
PPQTRAFFAS SSRFKTEQGV KTEEEVVSSD LNSRGPRTAP ESNGEGMCRR KLNFEKKKAE  180
ESQNSKRTER VVGIQRDFAG TSSSSVAGFS IVITKSYLTS LALPVSVVNF MPRVKSVVKI  240
HHPNGKKLWK VVFLVTRRGR LFSGGWRSLC MDYPVALGDT CKFTLINPHE LLLVVTKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545971e-165AC254597.1 Capsella rubella clone CAP08-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288334.10.0hypothetical protein CARUB_v10001579mg
SwissprotQ9LXE11e-140REM23_ARATH; B3 domain-containing protein REM23
TrEMBLR0FG330.0R0FG33_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0006_8791e-148(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09780.11e-141B3 family protein