PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001414m
Common NameCARUB_v10001409mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 331aa    MW: 36569 Da    PI: 9.0124
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001414mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.6e-104586445
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                      k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Carubv10001414m 45 QKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 86
                     5888*************************9877777766555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.1E-83989No hitNo description
SMARTSM003384.9E-842105IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384488IPR004827Basic-leucine zipper domain
PfamPF001706.4E-74686IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.94E-74689No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141448.0E-35128203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGDTSPRTDA STDDDTDHPD LGSEGALANT AASDSSDRSK GKMDQKTLRR LAQNREAARK  60
SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSTG DQAHSTGGNG ALAFDAEHSR  120
WLEEKNKQMN ELRSALNAHA GDAELRTIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK  180
TPAERCFLWL GGFRSSELLK LLANQLEPMT ERQLGGINNL QQTSQQAEDA LSQGMESLQQ  240
SLADTLSNGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT LQQMIRVLTT  300
RQSARALLAI HDYFSRLRAL SSLWLARPRE *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the C-boxes (5'-ATGACGTCAT-3') with high affinity. {ECO:0000269|PubMed:12897257}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001414m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1176860.0AK117686.1 Arabidopsis thaliana At5g06950 mRNA for putative bZip transcription factor AtbZip20/tga2, complete cds, clone: RAFL17-34-M19.
GenBankATHAHBP1B0.0D10042.1 Arabidopsis thaliana mRNA for AHBP-1b, complete cds.
GenBankBT0061340.0BT006134.1 Arabidopsis thaliana clone U50303 putative bZIP transcription factor, HBP-1b homolog (At5g06950) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288172.10.0transcription factor TGA2
RefseqXP_006288173.10.0transcription factor TGA2
RefseqXP_023637085.10.0transcription factor TGA2
RefseqXP_023637086.10.0transcription factor TGA2
SwissprotP432730.0TGA2_ARATH; Transcription factor TGA2
TrEMBLR0H8610.0R0H861_9BRAS; Uncharacterized protein
STRINGXP_006288172.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.40.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Huang LJ, et al.
    Ectopically expressed glutaredoxin ROXY19 negatively regulates the detoxification pathway in Arabidopsis thaliana.
    BMC Plant Biol., 2016. 16(1): p. 200
    [PMID:27624344]
  5. Uhrig JF, et al.
    CC-type glutaredoxins recruit the transcriptional co-repressor TOPLESS to TGA-dependent target promoters in Arabidopsis thaliana.
    Biochim Biophys Acta Gene Regul Mech, 2017. 1860(2): p. 218-226
    [PMID:27838237]
  6. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]