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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001166m | ||||||||
Common Name | CARUB_v10001166mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 384aa MW: 44905 Da PI: 4.8124 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.8 | 1.6e-14 | 9 | 48 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i +++ r++tf kR++g++KK +EL +LC+++++ +i+s+ Carubv10001166m 9 IADERSRKTTFMKRKKGMIKKLHELTTLCGVQACGVIYSP 48 78999*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-17 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-6 | 1 | 21 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.703 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.82E-27 | 2 | 83 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-19 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-15 | 9 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-6 | 21 | 36 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MRKLKLSLIA DERSRKTTFM KRKKGMIKKL HELTTLCGVQ ACGVIYSPYL PAPEVWPSKE 60 GVEEVVTKFM EMPMAAKTKK MMNQDTYLRE QITKTKEQVE KLASENRDLE VKQFMFDCLE 120 GKMLEYRYGA KDLHDLHCYI NSYIEKLTRR MEILEENGES SSFPPLSVGA ADLDPLAIAD 180 FPVNVNASAI SVASEFFDHI QYQNMNMYQN MQEPVQNLQE PVQYLQEPVQ YLQEPVQYLQ 240 EPVQYLQEPI QYMQEPVQYP QEPFQYMQEP FQYQAFHDRN GHIQEEVYNN MTWNPTMNLD 300 LSHNLNFNLD LNLNQYLNQE NSFKDMMVER NVGYARIPFI YGNLSNYRQQ PTVDLDITNH 360 MPFITSSTTS TLGAYASYNN NYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 29 | RKTTFMKRKKGMIKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001166m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006287931.1 | 0.0 | agamous-like MADS-box protein AGL90 | ||||
Swissprot | Q7XJK6 | 1e-85 | AGL36_ARATH; Agamous-like MADS-box protein AGL36 | ||||
TrEMBL | R0GV86 | 0.0 | R0GV86_9BRAS; Uncharacterized protein | ||||
STRING | XP_006287931.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26650.1 | 4e-85 | AGAMOUS-like 36 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001166m |
Entrez Gene | 17883506 |
Publications ? help Back to Top | |||
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