PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9739_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 209aa    MW: 22257.9 Da    PI: 10.1684
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9739_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05178200223
                                         EETTTTEEESSHHHHHHHHHH.T CS
                             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                         +C++C++ F+ ++ L++H  + H
  cra_locus_9739_iso_2_len_768_ver_3 178 SCHKCNEQFTKWEALETHHLSrH 200
                                         7*****************99878 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280179200IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MPAVWFALKK SLHCKSEPAE VHDPKANGNL SSILTKKTGR SGCSRSIANL RDVIHGSKRH  60
IEKPTICSPR SIGSSELLNP ITHEVVLSNS TCELKISGYG FQDNNVSGGP GGAGVSSFVG  120
TLKPGTPGPG GHHYKPKGLG SPMRRTGTSL SKRRGSGFGT ISSKPSFGVD SHGFTTLSCH  180
KCNEQFTKWE ALETHHLSRH AVTELLEGX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027161740.13e-99uncharacterized protein LOC113762475
TrEMBLA0A068VJQ85e-96A0A068VJQ8_COFCA; Uncharacterized protein
STRINGXP_009588899.13e-92(Nicotiana tomentosiformis)