PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_96029_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 112aa    MW: 12470.4 Da    PI: 11.3264
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_96029_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.8e-171246135
                                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                         C  C+tt TplWR gp g+k+LCnaCG++y kk++
  cra_locus_96029_iso_1_len_334_ver_3 12 CDGCHTTRTPLWRGGPGGPKSLCNACGIKYNKKRR 46
                                         889*****************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.728641IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-9664IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-11947No hitNo description
CDDcd002022.74E-101169No hitNo description
Gene3DG3DSA:3.30.50.102.8E-141146IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.5E-141246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
XKNSSRCTLK SCDGCHTTRT PLWRGGPGGP KSLCNACGIK YNKKRRQLLV LDTGRSNAKK  60
KRSGSMNRSS EEAREILKLR FIALGSKMVL QRSGNLMSKL REEERAALLL MA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14361KRRQLLVLDTGRSNAKKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079598.13e-53PREDICTED: GATA transcription factor 15-like
RefseqXP_011079599.13e-53PREDICTED: GATA transcription factor 15-like
SwissprotQ8LG101e-25GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A068VHS23e-38A0A068VHS2_COFCA; Uncharacterized protein
STRINGBGIOSGA013867-PA3e-27(Oryza sativa Indica Group)
STRINGBGIOSGA013869-PA3e-27(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85032229