PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8887_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 200aa    MW: 22378.3 Da    PI: 9.3543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8887_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.8e-075599344
                                         SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS
                      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44
                                          WT+eE+ +l ++ +++ ++    + ++Ia ++  ++t  ++ +r 
  cra_locus_8887_iso_3_len_1630_ver_3 55 DWTPEEQAILEEGLAKYSSEssivRYAKIAMHLD-NKTIRDVALRC 99
                                         7*********************************.99999998885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.3E-452105IPR001005SANT/Myb domain
PfamPF002493.9E-654100IPR001005SANT/Myb domain
SuperFamilySSF466893.43E-655108IPR009057Homeodomain-like
CDDcd001675.50E-656100No hitNo description
Gene3DG3DSA:1.10.10.605.8E-556109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDYFCPAEFS CSSASSPSSS AGVVSYNVKA PVSGIFDTSA SAVKFQPNLH GISMDWTPEE  60
QAILEEGLAK YSSESSIVRY AKIAMHLDNK TIRDVALRCR WLSKRDVSKR RKEDINLTRK  120
SKDRKDKILD PSAMASNAGM QSGFPSYAQM LKNDNGISYN AISGITWQLL RQNAQTFEQI  180
STNLAAHQVN YHFRFPFSFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118125RKSKDRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272798.13e-61PREDICTED: uncharacterized protein LOC100257710 isoform X1
TrEMBLF6GX474e-61F6GX47_VITVI; Putative uncharacterized protein
STRINGVIT_00s0226g00040.t011e-60(Vitis vinifera)