PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_88601_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 87aa    MW: 9574.69 Da    PI: 9.3001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_88601_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-053456123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         y+C+ C+k Fs+   L  H++ H
  cra_locus_88601_iso_1_len_445_ver_3 34 YECNFCKKGFSNAQALGGHMNIH 56
                                         99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-72260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.21E-83261No hitNo description
PROSITE profilePS5015711.8013461IPR007087Zinc finger, C2H2
SMARTSM003550.00633456IPR015880Zinc finger, C2H2-like
PfamPF139124.9E-63458IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MENNNDQQPA AASSEQVSSP DQSQQQTHVV IRSYECNFCK KGFSNAQALG GHMNIHRKDK  60
AKLKQASKET KKSIKADITS TMPPLDA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132037.11e-24hypothetical protein PHAVU_011G061500g
TrEMBLV7AIU73e-23V7AIU7_PHAVU; Uncharacterized protein
STRINGXP_007132037.16e-24(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152