PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_88291_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 84aa    MW: 9427.49 Da    PI: 8.8581
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_88291_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000396483120
                                         EEETTTTEEESSHHHHHHHH CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                                         y+C+ C++ F++   L  H+
  cra_locus_88291_iso_1_len_360_ver_3 64 YSCSFCTREFRSAQALGGHM 83
                                         99***********9998888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.6216484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MQQRSQYLMW LKSKQILKSQ YYLGASNMKI KSCSREDIEE ATAAFGEDVV SGGGLGFAWP  60
PRSYSCSFCT REFRSAQALG GHMX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027155325.12e-20probable transcriptional regulator RABBIT EARS
TrEMBLA0A151R8G64e-17A0A151R8G6_CAJCA; Putative transcriptional regulator RABBIT EARS
STRINGPOPTR_0010s20740.16e-17(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453