PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8669_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 297aa    MW: 32755.1 Da    PI: 8.4624
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8669_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05235257223
                                          EETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                          +Cp C+ +Fs+  nL++H  + H
  cra_locus_8669_iso_4_len_1319_ver_3 235 QCPQCNLRFSSVTNLVNHVEKvH 257
                                          7*****************99888 PP

2zf-C2H216.91.8e-05269291223
                                          EETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                          +Cp+C+k F+++  L+ H  + H
  cra_locus_8669_iso_4_len_1319_ver_3 269 VCPKCSKGFRDPVALVEHVEKeH 291
                                          7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183106.8E-5734No hitNo description
Gene3DG3DSA:4.10.1110.103.2E-11102163IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.0E-8105155No hitNo description
PfamPF014286.1E-8113152IPR000058Zinc finger, AN1-type
SMARTSM003550.016234257IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683234257IPR007087Zinc finger, C2H2
PfamPF138944.6E-4235257No hitNo description
SuperFamilySSF576671.5E-5235287No hitNo description
PROSITE patternPS000280236257IPR007087Zinc finger, C2H2
SMARTSM003553.4268291IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078268296IPR007087Zinc finger, C2H2
PROSITE patternPS000280270291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGTPAFPNLG KHCSVEDCRQ IDFLPFTCDS CHKIPVNHQS AHSLAGLLFG APELWRHKCP  60
KANQNDVTVV ICPLCAKGVR LIPDESPNIT WESHVNTECD PSNYEKVTKK NKCPVPRCKE  120
ILTFSNTIKC KDCMVEHCLK HRFGPDHNCP GPKRPDTAFQ FSSLLNRSRR NESNSQQAPA  180
TSSSWASTLF RAASSVRATA EAGMAKLSSE FSQASVRESS SNNGHSGGRT GLVEQCPQCN  240
LRFSSVTNLV NHVEKVHERN GIMKSTIDVC PKCSKGFRDP VALVEHVEKE HRGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237224.11e-140PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ0D5B91e-113SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2R6R5741e-142A0A2R6R574_ACTCH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein
TrEMBLA0A2R6S2371e-142A0A2R6S237_ACTCH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein
STRINGXP_009765392.11e-139(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]