PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8669_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 87aa    MW: 9521.64 Da    PI: 8.3602
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8669_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0012547223
                                        EETTTTEEESSHHHHHHHHHH.T CS
                             zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                                        +Cp C+ + s+  +L++H  + H
  cra_locus_8669_iso_2_len_493_ver_3 25 QCPQCNLRLSSVTDLVNHVEKvH 47
                                        7*****************99988 PP

2zf-C2H219.52.7e-065981223
                                        EETTTTEEESSHHHHHHHHHH.T CS
                             zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                                        +Cp+C+k F+++  L+ H  + H
  cra_locus_8669_iso_2_len_493_ver_3 59 VCPKCSKGFRDPVALVEHVEKeH 81
                                        7*****************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.282447IPR015880Zinc finger, C2H2-like
PfamPF138949.8E-42547No hitNo description
SuperFamilySSF576677.79E-52577No hitNo description
PROSITE patternPS0002802647IPR007087Zinc finger, C2H2
SMARTSM003553.45881IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0785886IPR007087Zinc finger, C2H2
PROSITE patternPS0002806081IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
FSQASVRGSS SNNGHSGDRT GFVEQCPQCN LRLSSVTDLV NHVEKVHERN GIMKSTIDVC  60
PKCSKGFRDP VALVEHVEKE HRGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543719.13e-35PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ428e-24SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLM1C6L91e-36M1C6L9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000608872e-34(Solanum tuberosum)