PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8669_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 285aa    MW: 31607.8 Da    PI: 8.5025
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8669_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05223245223
                                          EETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                          +Cp C+ +Fs+  nL++H  + H
  cra_locus_8669_iso_1_len_1282_ver_3 223 QCPQCNLRFSSVTNLVNHVEKvH 245
                                          7*****************99888 PP

2zf-C2H2171.7e-05257279223
                                          EETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                          +Cp+C+k F+++  L+ H  + H
  cra_locus_8669_iso_1_len_1282_ver_3 257 VCPKCSKGFRDPVALVEHVEKeH 279
                                          7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183105.23E-13751No hitNo description
PROSITE profilePS510397.9071059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.7E-101151IPR000058Zinc finger, AN1-type
SMARTSM001540.00371352IPR000058Zinc finger, AN1-type
PfamPF014287.1E-141351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.8E-1190151IPR000058Zinc finger, AN1-type
SuperFamilySSF1183108.37E-993143No hitNo description
PROSITE profilePS510397.88998146IPR000058Zinc finger, AN1-type
SMARTSM001540.029101142IPR000058Zinc finger, AN1-type
PfamPF014285.8E-8101140IPR000058Zinc finger, AN1-type
SMARTSM003550.016222245IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683222245IPR007087Zinc finger, C2H2
PfamPF138944.3E-4223245No hitNo description
SuperFamilySSF576671.4E-5223275No hitNo description
PROSITE patternPS000280224245IPR007087Zinc finger, C2H2
SMARTSM003553.4256279IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078256284IPR007087Zinc finger, C2H2
PROSITE patternPS000280258279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGTPAFPNLG KHCSVEDCRQ IDFLPFTCDS CHKVFCLEHR SYGRHKCPKA NQNDVTVVIC  60
PLCAKGVRLI PDESPNITWE SHVNTECDPS NYEKVTKKNK CPVPRCKEIL TFSNTIKCKD  120
CMVEHCLKHR FGPDHNCPGP KRPDTAFQFS SLLNRSRRNE SNSQQAPATS SSWASTLFRA  180
ASSVRATAEA GMAKLSSEFS QASVRESSSN NGHSGGRTGL VEQCPQCNLR FSSVTNLVNH  240
VEKVHERNGI MKSTIDVCPK CSKGFRDPVA LVEHVEKEHR GTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237224.11e-152PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
RefseqXP_022856924.11e-152zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like
SwissprotQ0D5B91e-123SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2R6R5741e-155A0A2R6R574_ACTCH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein
STRINGXP_009765392.11e-150(Nicotiana sylvestris)
STRINGXP_010102532.11e-149(Morus notabilis)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]