PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8285_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 124aa    MW: 13608 Da    PI: 3.8938
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8285_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA369.3e-121241235
                                GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35
                                        +Rrgp g++tLCnaCGl+++ kg+
  cra_locus_8285_iso_2_len_719_ver_3  1 MRRGPAGPRTLCNACGLMWANKGT 24
                                        5********************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002021.51E-11134No hitNo description
SMARTSM004010.0042135IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-10129IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.4E-9124IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-6133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MRRGPAGPRT LCNACGLMWA NKGTLRDLSK GAKPSPFDQS ELDMSDIKSC MMETENSYHN  60
QNEEDLLEAA EGLAEDSSIV MGNPSMKLDD QENLEELANA SGSELEIPAN FDEQVWLSSN  120
PDLI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776485.13e-44PREDICTED: GATA transcription factor 28-like isoform X2
TrEMBLA0A068TMB91e-51A0A068TMB9_COFCA; Uncharacterized protein
STRINGSolyc01g106040.2.13e-37(Solanum lycopersicum)