PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8255_iso_8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 649aa    MW: 71457 Da    PI: 7.4397
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8255_iso_8genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-08531579348
                                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                          +W+  E  +lv++v+++G g+W+ I r        Rt  ++k++w+++l
  cra_locus_8255_iso_8_len_2481_ver_3 531 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 579
                                          8****************************99**99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.092524583IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-13526584IPR009057Homeodomain-like
SMARTSM007171.1E-8528581IPR001005SANT/Myb domain
CDDcd116602.64E-18530580No hitNo description
SuperFamilySSF466891.09E-15530587IPR009057Homeodomain-like
PfamPF002491.3E-6531579IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
METVVGVEGN DEAKADNLAS DAVSDLTFLN PVSDPVVYKL VRVDGDGRLV PATDDEVMVV  60
EDLLKDDKSE VHFAAKNQSI DTTKRSLPET AHSNCSGGQP GNLDVGATIL NIHGDPSMER  120
REAKRIRKPT KRYIEETSDV GSRESNGRLV SLVELGKRIA HQEESTRSEG MNTSQSQNLE  180
ACSSSQGRSI GIDASTSGGS ITKPDFSMLK GEICLDNLSI KDLQETFKAT FGRETSVKDK  240
QWLKRRIAMG LTNSCDFSTT TFIIEDNRVV KMFKGETSKS SAASEDLIAE AGNQTSGGLT  300
DVCDKEINVH SDSDAKRPES SLLECNSVGE DPNVEQRVAK RVRKPTKRYI EEISEGESRE  360
SSGRMITLVR SPESGQQSAK SVVRPFHHSQ QEGRPTVTRQ DSFGGSGVQV PFVSRVRRSR  420
PRENFMTLAK LQLDDIGTSA KVVKKAFEEP ARMAHDDAGN NVLKASLSPK WIGQPLIAVS  480
EEGKHHPERI VEHENDIELK SMNSFGYKSD DSNVVNMPAP MGGMRRKHHR PWSLTEVVKL  540
VEGVARYGAG RWSEIKRLAF ASYSYRTSVD LKDKWRNLLR ASLTQLPAEN GMQNSRKHAS  600
IPIPAPILLR VRELAETQAQ VPPNISSSKF AGHSGGTDRN SQETRPGYL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654463.10.0PREDICTED: uncharacterized protein LOC100263481 isoform X4
TrEMBLA0A0K1SBL30.0A0A0K1SBL3_REHGL; Telomere repeat-binding factor like-protein
STRINGVIT_09s0002g01480.t010.0(Vitis vinifera)