PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8195_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 671aa    MW: 78012.5 Da    PI: 6.3364
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8195_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.87.3e-2360142290
                                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 
                                          fYn YAk+ GF vr+s++ ++ +++e +++++ Cs  g++++++ +     r+r+etrtgC a++k +++++++
  cra_locus_8195_iso_2_len_2229_ver_3  60 FYNCYAKQQGFGVRVSNTWYR-KSRERYRAKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMENKR 127
                                          9***************99997.66679**************99888.....*********************** PP

                                 FAR1  76 wevtkleleHnHela 90 
                                          w+++++eleHnH ++
  cra_locus_8195_iso_2_len_2229_ver_3 128 WRIIEVELEHNHLIS 142
                                          ************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-2060142IPR004330FAR1 DNA binding domain
PfamPF105511.0E-20264352IPR018289MULE transposase domain
PROSITE profilePS509669.198552588IPR007527Zinc finger, SWIM-type
SMARTSM005758.2E-5563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MDEVSLNSEP VYDDEAEEFE IDGDCAMTEF IGQSGVLQGE NPLPPAVGME FETYEDVYYF  60
YNCYAKQQGF GVRVSNTWYR KSRERYRAKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMENKRWRI IEVELEHNHL ISPSGGKSYK SHRKLGPGSK RCLQIDCPEE VQKIRLFRTV  180
IIDEEDSGKL IHEEDEFGNK DDQFNNQLKL SRGDSQAMHK FFTTMQLMNP NFFYVMDLNE  240
KGCLRNVFWA DAKSRAAYGY FGDVITIDTS CLIRKHQVPL VVLVGLNHHG QPFPLGCGLV  300
AGESVESYVW VFRAWLTYMV GRSPQAIISE QHKSLQTALG EVFPRASHFL SLTSILEKLP  360
EELGSLQEYE AIKVSFIRSV CDSLRVDEFE AGWEDMMNQH AISYHKWLQT LYKDRKRWVP  420
AYTKETFLAG MFPINENERV ISPFDGYLSK CTTLKDFLDN YDKFLEDINQ REALANMESR  480
NLNGLLKTTF YYELQLSKLY TNNIFIKFQE QVQGMYSCFS TRQICIDGSV ISYLVKEHTE  540
AVNNHRRETK DYEVMYNTAD AEIICVCGMF NLKGYLCRHS LCVLKQNGLE EIPSQYILSR  600
WRKDVHRSYV FDQSFNDIDI NNPVHRYDNL YKCILNVVEQ GRKSHDRYAF TLQALDEIMN  660
KFRLEKSDQS S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771778.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA5C4940.0A5C494_VITVI; Putative uncharacterized protein
STRINGPOPTR_0001s20880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970