PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8127_iso_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 537aa    MW: 58603.8 Da    PI: 9.7099
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8127_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-057698123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         + C++C+k F r  nL+ H r H
  cra_locus_8127_iso_6_len_2577_ver_3 76 FICEICNKGFQRDQNLQLHRRGH 98
                                         89*******************88 PP

2zf-C2H211.80.00077152174123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          +kC++C+k +  +s+ k H + +
  cra_locus_8127_iso_6_len_2577_ver_3 152 WKCEKCSKKYAVQSDWKAHSKIC 174
                                          58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.31E-77598No hitNo description
Gene3DG3DSA:3.30.160.601.4E-57598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0227698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8457698IPR007087Zinc finger, C2H2
PfamPF121716.5E-57698IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM00355100117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.31E-7147172No hitNo description
SMARTSM00355140152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MTXSSSIRGF IHHQDPNNII NPPPHHDPNP IPPPNNNPNP TSNPSAKRKR NLPGTPDPDA  60
EVIALSPKSL MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK EVRKKVYICP  120
EKTCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYK  180
CDCGTLFSRK DSFITHRAFC DALAEESARF TSVPTAPNLS FRNELFNGGI TNLHQGGNAQ  240
FSGVLRPENI GGLVDSLDGQ KPRLPMWLDN ANSQVLSPIG NSGNNSNNAA FLASSSSTSL  300
QELVQMSSQN QWLINNNRGQ DSSSSFPVGG ANVSSSSSGL QRVVLKEEEE NKANLSESLN  360
SMYYNETSAH MSATALLQKA AQMGSTRSNS SIFGTGFGLM SSSLSTQLGN FNSLSQNHHH  420
HHHENNLNGL MTSTPNSSST LTSSHHQGEG LLFGNMNSST SLMGNPPAPT MIPNNDQRNI  480
QSNKSIGNDQ AAAAGGEGSL TRDFLGVGRG SENRQPFLKF TSMGNNSNSA MNSFGSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-36148213368Zinc finger protein JACKDAW
5b3h_F4e-36148213368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102114KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108036.10.0zinc finger protein BALDIBIS-like isoform X2
SwissprotQ944L31e-123IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBLA0A1S3XRQ40.0A0A1S3XRQ4_TOBAC; protein indeterminate-domain 9-like isoform X2
TrEMBLA0A1U7XIP20.0A0A1U7XIP2_NICSY; zinc finger protein JACKDAW-like
STRINGXP_009789501.10.0(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]