PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_80_iso_10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 333aa    MW: 37100.3 Da    PI: 7.4562
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_80_iso_10genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind120.41e-37111022102
                                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXT CS
                        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskske 76 
                                         Fl+k+y++++d+ ++++isw+eng++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++       
  cra_locus_80_iso_10_len_1487_ver_3  11 FLTKTYQLVDDPITDDVISWNENGTAFVVWKTAEFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK------- 78 
                                         9****************************************************************999....... PP

                                         TSEEEEESXXXXXXXXXXXXXXXXXX CS
                        HSF_DNA-bind  77 kiweFkhksFkkgkkellekikrkks 102
                                           weF++++Fk+g+k+ll++i+r+k+
  cra_locus_80_iso_10_len_1487_ver_3  79 --WEFANENFKRGQKHLLTEIRRRKT 102
                                         ..**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.4E-39395IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-617100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-348100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.6E-211134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.9E-3311100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-214961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-216274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSQQRTVPAP FLTKTYQLVD DPITDDVISW NENGTAFVVW KTAEFAKDLL PNYFKHNNFS  60
SFVRQLNTYG FRKIVPDKWE FANENFKRGQ KHLLTEIRRR KTSLLPSSKT TSCSKSKAPA  120
PAPTNSGEDL GSSSTSSPDS KNPGSVDTVP CSYSAAQFAD LSDENEKLRK DNHILSLELA  180
QTKKQCQELI SFLTKHVKVV PHDQINRIMT TTSSSHHEHG TTSVAHDQVQ PQLTTATLPP  240
SDHHHHNDDD DHMNGRDQES LRLFGVLLKS DKKKRGRPYN DDIDIDIGVG AGAGAHQTKE  300
IKTTMDFDAA PSSSWTKLTI SCYGQSSKVC ATE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-27110411124Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079229.11e-118PREDICTED: heat shock factor protein HSF24
SwissprotP223351e-105HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A067KI291e-118A0A067KI29_JATCU; Uncharacterized protein
STRINGVIT_07s0031g00670.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127