PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7643_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 182aa    MW: 20364.1 Da    PI: 9.0733
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7643_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001792108117
                                         EEETTTTEEESSHHHHH CS
                             zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                                         ++Cp C k+F+r  n++
  cra_locus_7643_iso_1_len_769_ver_3  92 FSCPLCFKTFNRYNNMQ 108
                                         89*********988875 PP

2zf-C2H215.74.2e-05123145123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                         + C +Cgk F  + + ++H +++
  cra_locus_7643_iso_1_len_769_ver_3 123 FMCRKCGKAFAVRGDWRTHEKNC 145
                                         89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.08E-792143No hitNo description
Gene3DG3DSA:3.30.160.603.9E-6119143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808123143IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MMIINKNRPF AAAKEGGEAE SVTVALHIGL PNPSAADLAA SSSSTTSTNK DEEEDQEEEV  60
EEGINTGYNM RVKKGQYWIP TPSQILIGPT QFSCPLCFKT FNRYNNMQNP SNTFKRKHGI  120
KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GHGHGPYATT  180
TT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792207.12e-74PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ9SVY12e-64ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1U7XJH13e-73A0A1U7XJH1_NICSY; protein TRANSPARENT TESTA 1-like
TrEMBLA0A426X6R08e-74A0A426X6R0_ENSVE; Uncharacterized protein
STRINGXP_009792207.16e-74(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]