PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_763_iso_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 286aa    MW: 30737.1 Da    PI: 8.5108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_763_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002399121123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                         ++C++C + F ++  L  H++ H
  cra_locus_763_iso_5_len_1165_ver_3  99 FSCNYCQRKFYSSQALGGHQNAH 121
                                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-697126No hitNo description
PROSITE profilePS5015711.42799126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MKEAAGKEPS EESNSSIDNS MEENPTQENT KNTPDHLALD LTLSSKDSHV VHHVLEGNFK  60
KPDELNLIDS LHDQKNSSSS SILLEQQPSS DDQQPARVFS CNYCQRKFYS SQALGGHQNA  120
HKRERTIAKR GQRIGANNNA TATSSSFGPF SSTMASLPLH GTFNRSLGIQ AHSMIHKPSS  180
NCFNNVGLLP TMFGHHHGGG GGGAWSRKPL DQQPAIGRLA PENYHMGSSL LGTSSSGGGG  240
GGAKAARFDS FTKFSSPAVV AMADGFKPPL RTNQDELKKL DLTLKL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269|PubMed:24808098}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272545.13e-67PREDICTED: zinc finger protein 1
SwissprotQ392624e-38ZFP3_ARATH; Zinc finger protein 3
TrEMBLA0A438DJP65e-66A0A438DJP6_VITVI; Zinc finger protein 1
TrEMBLA5BQW14e-66A5BQW1_VITVI; Uncharacterized protein
STRINGVIT_09s0002g09080.t011e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  3. Zhang A, et al.
    The Arabidopsis Gene zinc finger protein 3(ZFP3) Is Involved in Salt Stress and Osmotic Stress Response.
    PLoS ONE, 2016. 11(12): p. e0168367
    [PMID:27977750]