PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_763_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 204aa    MW: 21794.5 Da    PI: 10.647
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_763_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000151739123
                                       EEETTTTEEESSHHHHHHHHHHT CS
                            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                       ++C++C + F ++  L  H++ H
  cra_locus_763_iso_3_len_762_ver_3 17 FSCNYCQRKFYSSQALGGHQNAH 39
                                       89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-61544No hitNo description
PROSITE profilePS5015711.4271744IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
HVVHHVLEDD QQPARVFSCN YCQRKFYSSQ ALGGHQNAHK RERTIAKRGQ RIGANNNATA  60
TSSSFGPFSS TMASLPLHGT FNRSLGIQAH SMIHKPSSNC FNNVGLLPTM FGHHHGGGGG  120
GAWSRKPLDQ QPAIGRLAPE NYHMGSSLLG TSSSGGGGGG AKAARFDSFT KFSSPAVVAM  180
ADGFKPPLRT NQDELKKLDL TLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272545.19e-62PREDICTED: zinc finger protein 1
TrEMBLA5BQW11e-60A5BQW1_VITVI; Uncharacterized protein
STRINGVIT_09s0002g09080.t013e-61(Vitis vinifera)