PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_763_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 246aa    MW: 26799.8 Da    PI: 8.1639
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_763_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001999121123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                         ++C++C + F ++  L  H++ H
  cra_locus_763_iso_1_len_1045_ver_3  99 FSCNYCQRKFYSSQALGGHQNAH 121
                                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.73E-697126No hitNo description
PROSITE profilePS5015711.42799126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MKEAAGKEPS EESNSSIDNS MEENPTQENT KNTPDHLALD LTLSSKDSHV VHHVLEGNFK  60
KPDELNLIDS LHDQKNSSSS SILLEQQPSS DDQQPARVFS CNYCQRKFYS SQALGGHQNA  120
HKRERTIAKR GQRIGANNNA TATSSSFGPF SSTMASLPLH GTFNRSLGIQ AHSMIHKPSS  180
NCFNNVGLLP TMFGHHHGGG GGAKAARFDS FTKFSSPAVV AMADGFKPPL RTNQDELKKL  240
DLTLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272545.13e-51PREDICTED: zinc finger protein 1
TrEMBLA5BQW12e-50A5BQW1_VITVI; Uncharacterized protein
STRINGVIT_09s0002g09080.t011e-50(Vitis vinifera)