PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7357_iso_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 161aa    MW: 18096.3 Da    PI: 10.0049
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7357_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33.1e-0694116123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                         ++C++C+k F r  nL+ H r H
  cra_locus_7357_iso_6_len_639_ver_3  94 FVCEICNKGFQRDQNLQLHRRGH 116
                                         89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.75E-592117No hitNo description
Gene3DG3DSA:3.30.160.603.6E-693116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.8E-594116IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94994116IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MMKDLILVHQ QQQSVLEENM SNLTSASNEA SASSSVNRND SGNGSIYPPP QQHYFVPPNQ  60
PPPPKKKRNL PGNPDPDAEV IALSPKALLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW  120
KLKQRTSKEI RKKVYVCPET SCVHHDPSRA LGDLTGIKKH X
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120132KLKQRTSKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126922.16e-88protein indeterminate-domain 11-like
SwissprotQ8H1F52e-67IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLG7LHG95e-82G7LHG9_MEDTR; C2H2-like zinc finger protein, putative
STRINGAET015858e-83(Medicago truncatula)
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]