PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7357_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 161aa MW: 18096.3 Da PI: 10.0049

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7357_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3.1e-06	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H cra_locus_7357_iso_6_len_639_ver_3 94 FVCEICNKGFQRDQNLQLHRRGH 116 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.75E-5	92	117	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.6E-6	93	116	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	1.8E-5	94	116	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	94	116	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MMKDLILVHQ QQQSVLEENM SNLTSASNEA SASSSVNRND SGNGSIYPPP QQHYFVPPNQ 60 PPPPKKKRNL PGNPDPDAEV IALSPKALLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW 120 KLKQRTSKEI RKKVYVCPET SCVHHDPSRA LGDLTGIKKH X

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	132	KLKQRTSKEIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027126922.1	6e-88	protein indeterminate-domain 11-like
Swissprot	Q8H1F5	2e-67	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	G7LHG9	5e-82	G7LHG9_MEDTR; C2H2-like zinc finger protein, putative
STRING	AET01585	8e-83	(Medicago truncatula)

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]