PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7357_iso_10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 223aa    MW: 25433.9 Da    PI: 9.8815
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7357_iso_10genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-0694116123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          ++C++C+k F r  nL+ H r H
  cra_locus_7357_iso_10_len_826_ver_3  94 FVCEICNKGFQRDQNLQLHRRGH 116
                                          89*******************88 PP

2zf-C2H2171.6e-05170192123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          +kC +C+k +  +s+ k H++t+
  cra_locus_7357_iso_10_len_826_ver_3 170 WKCDKCSKKYAVQSDWKAHQKTC 192
                                          58*******************98 PP

3zf-C2H210.90.0015200218523
                                          TTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                          dCg+ Fsr++++ +H   +
  cra_locus_7357_iso_10_len_826_ver_3 200 DCGTIFSRRDSFITHRAFC 218
                                          8**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-693116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-893116No hitNo description
SMARTSM003550.01794116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94994116IPR007087Zinc finger, C2H2
PfamPF121712.9E-594116IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SMARTSM0035582135165IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-6158191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-8165191No hitNo description
SMARTSM0035594170190IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MMKDLILVHQ QQQSVLEENM SNLTSASNEA SASSSVNRND SGNGSIYPPP QQHYFVPPNQ  60
PPPPKKKRNL PGNPDPDAEV IALSPKALLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW  120
KLRQRTTTEI RKRVYICPEP SCVHHNPARA LGDLTGIKKH YSRKHGEKKW KCDKCSKKYA  180
VQSDWKAHQK TCGTREYKCD CGTIFSRRDS FITHRAFCDA LAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34166223360Zinc finger protein JACKDAW
5b3h_F1e-34166223360Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627109.11e-132protein indeterminate-domain 7
SwissprotQ8H1F51e-115IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLG7LHG91e-130G7LHG9_MEDTR; C2H2-like zinc finger protein, putative
STRINGAET015851e-131(Medicago truncatula)
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]