PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7331_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 680aa    MW: 78703.7 Da    PI: 6.5079
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7331_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.52.5e-2470161190
                                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.. 72 
                                          ++Y+ +A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke   
  cra_locus_7331_iso_1_len_3538_ver_3  70 EYYSIFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEVvd 142
                                          59********************8888.*******************************************9987 PP

                                 FAR1  73 .dgkwevtkleleHnHela 90 
                                           + +w+++++++ HnHel 
  cra_locus_7331_iso_1_len_3538_ver_3 143 gRTQWYISQFSNVHNHELL 161
                                          8889*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-2270161IPR004330FAR1 DNA binding domain
PfamPF105515.5E-23293386IPR018289MULE transposase domain
PROSITE profilePS509669.878565600IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-6573597IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-4575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MATKPLNNIW IRRQQCPCGD WKCYIKYEGD DHAAVGPQSV KNETSITSPL EVVFTPYVGQ  60
IFNTDEEAFE YYSIFARKNG FSIRKARSTE SQNLGIYRRD FVCYRSGFNQ PRKKANVEHP  120
RDRKSVRCGC DAKLYLTKEV VDGRTQWYIS QFSNVHNHEL LEDDQVRLLP AYRKIQEADQ  180
ERILLLSKAG FPVNRILKVL ELEKGVQPGQ LPFIEKDVRN FVRTCKKTVQ ENDAMLTEKR  240
ENDLLELLES CKTMAQRDDG FVYSYTTDEN GKVENIAWAY GDSVRAFSVF GDVVTFDTTY  300
RSITYNMLLG VWLGINNHGK AVFFGCVLLQ DETSQSFSWA MQVFIQFMSG RPPQTIVTDL  360
DSGLKDALAI EMPNTKHIIS IWQVLQKLSS WFSLLLGLKY TEFKSEFDIL CNLENVEDFE  420
HQWNHLVARF GLGSEKHMAL LFSCRTSWPV CYSQNFFLAH TLTSEYLKSV ETFFKSILDT  480
QSCLQSFFEQ VLITASSGYQ NRGELLYRPL KTCLPLEEHA SSVLTPYAFN AAQNEITQSM  540
QYAITEMANG SYLVRHYKRM ERECLVIWIP EDEQVHCSCK EFEHSGILCR HSLRVLVVKN  600
YFQIPEKYFP LRWRLESSLV PLDNQIIQSH NNEISQVFHS LTASLLSESL ISKERYDFVH  660
TELTKLLSNV RNMPVLDEVP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466671.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A0V0IQ620.0A0A0V0IQ62_SOLCH; Putative FAR1-related sequence 10-like
STRINGVIT_12s0057g00960.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927