PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6959_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family G2-like
Protein Properties Length: 249aa    MW: 27742.3 Da    PI: 8.0894
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6959_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.71.3e-33154255
                              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                                         +rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  cra_locus_6959_iso_4_len_1238_ver_3  1 QRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 54
                                         7****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.988157IPR017930Myb domain
TIGRFAMsTIGR015575.3E-25155IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.8E-31155IPR009057Homeodomain-like
SuperFamilySSF466897.88E-17154IPR009057Homeodomain-like
PfamPF002498.6E-10253IPR001005SANT/Myb domain
PfamPF143791.7E-2386132IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
QRLRWTHELH ERFVDAVAQL GGPDRATPKG VLRVMGVQGL TIYHVKSHLQ KYRLAKYLPD  60
SSSDGKKTDK KDSKEMLSNL DGSSGMQITE ALKLQMEVQK RLHEQLEVQK QLQLRIEAQG  120
KYLKKIIEEQ QRLSGVLSDA PSAGVTANQL GDNCPESEIR NDPGTPPPTS ESPVMDKPSK  180
ERAAAKSFSL DESFSSPQEP QTPESGCRIN LFENMDADRS SKKQRLSPSG LPPQISNVCP  240
PFEQPHSIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-23257459Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-23257459Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-23257358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-23257358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-23257358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-23257358Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-23257459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-23257459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-23257459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-23257459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-23257459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-23257459Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349121.11e-129PREDICTED: myb family transcription factor APL-like
RefseqXP_006349122.11e-129PREDICTED: myb family transcription factor APL-like
RefseqXP_015164958.11e-129PREDICTED: myb family transcription factor APL-like
SwissprotQ9SJW01e-111PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0V0HT251e-128A0A0V0HT25_SOLCH; Putative myb family transcription factor APL-like
STRINGPGSC0003DMT4000190991e-129(Solanum tuberosum)