PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6928_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 254aa    MW: 29707.4 Da    PI: 5.9541
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6928_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.92.5e-2678168190
                                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr.traetrtgCkaklkvkkekd 73 
                                          +fY +Y++++GF+vr++++++s+ n+ +++++fvCskeg+re++  +++++   + ++tr gC a+l+v +++ 
  cra_locus_6928_iso_2_len_1194_ver_3  78 EFYIAYGRRTGFTVRIHHNRRSRVNNMVISQDFVCSKEGFREKKYVQRKDRVLpSPPVTREGCPAMLRVALRDG 151
                                          6******************************************988833333347899**************** PP

                                 FAR1  74 gkwevtkleleHnHela 90 
                                           kw vtk++++HnH+l 
  cra_locus_6928_iso_2_len_1194_ver_3 152 VKWIVTKFVKDHNHSLL 168
                                          **************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2378168IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MENSLSKVFD SDESRSYLHI EKKDDDSFLE DELSTSMDFC IVEDDNCMEK LSENIPSSEN  60
ATEPQIGMEF SSKDDAREFY IAYGRRTGFT VRIHHNRRSR VNNMVISQDF VCSKEGFREK  120
KYVQRKDRVL PSPPVTREGC PAMLRVALRD GVKWIVTKFV KDHNHSLLSP GKVPWRGSGR  180
NVVSEDEKDQ RIRELTLELY NERQRCKRKC AAYEEKLQSL LKFIEDHTQH LSRTVEEIVE  240
LVKEIENKQV EDPN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207RQRCKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450613.11e-130PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_016450612.11e-130PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_016450611.11e-130PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A068U6N11e-138A0A068U6N1_COFCA; Uncharacterized protein
STRINGPOPTR_0002s24030.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14445910