PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6732_iso_9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 864aa    MW: 97755.5 Da    PI: 6.2212
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6732_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.86.6e-1768142189
                                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 
                                          +fY++YA+++GFs+ + + ++sk +g i++ +f Cs+e +++++ ++              C+a+l+ +ke+ +
  cra_locus_6732_iso_9_len_3235_ver_3  68 SFYDAYARRIGFSTHVGQYSRSKPDGPIISWDFACSREVFKRKNVES--------------CNAMLRTEKEDAD 127
                                          5****************************************999877..............************* PP

                                 FAR1  75 kwevtkleleHnHel 89 
                                          +w+vtk++++HnH+ 
  cra_locus_6732_iso_9_len_3235_ver_3 128 RWVVTKFVEDHNHST 142
                                          *************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.5E-1468142IPR004330FAR1 DNA binding domain
PfamPF105517.5E-30278370IPR018289MULE transposase domain
PROSITE profilePS5096611.066555591IPR007527Zinc finger, SWIM-type
PfamPF044345.8E-11556589IPR007527Zinc finger, SWIM-type
SMARTSM005755.0E-8566593IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
MDDEVFEVVD VERGKRHKNG KLQAQPRKDG KQNFLGNSIE TEKNNQVICE NEKPYEGMVF  60
TSEEAAKSFY DAYARRIGFS THVGQYSRSK PDGPIISWDF ACSREVFKRK NVESCNAMLR  120
TEKEDADRWV VTKFVEDHNH STVSPSKVHY LRPRRHFSGA TKNSVETVTS QSDIMVALDG  180
NYTFYDSNLG VMSASPVEPN SATRNFSPVA PTNLVQPCNH KRTLGRDSHN LLNYFKKMQA  240
ENPGFFYAIQ LDDDNRMSNV FWADARSRTA YGHFGDAVIF DTAYRPNQFQ VPFAPFTGVN  300
HHGQMVLFGC ALILDESEAS FSWIFKTWLS AMNNRPPVSM TTDQDRAIKA AVNQVFPETR  360
HCICKWHILR EGQERLAHIY LAHPSFYGEL YSCINFTETI EDFECSWGSL LNKYSLQENE  420
WLQAVYNARK QWAPVYFRDT FFAALSSNHG ASSFFDGYVN QQSTLPVFFQ QYERALENAL  480
EREIEADLDT LCTEPVLKTP SPMEQQAANL YTKKIFAKFQ EELVETFVYT ANEIDSDGMV  540
SKFRVAKYEH DDKAFIVTLS VSDMKASCSC QMFEYSGILC RHIVTVFTVT NILTVPPDYI  600
LKRWTRNARV VLLSDEDVEK QCVDSLTLRF NNLCGEALKF AGEGSISMET YNAAMAALRE  660
GLSKISAVKE NVAKVKLPTS QSDISGLLID ENSKKATVST SDMCPPLWPW QDMVSNHINL  720
NDGGVPVTDL NQPSLAPLAI NRDGALADCS VVLTCFKSMT WVIETKNPAN KIAVINLKLQ  780
DYSKTPSGET DVQFRLTRVT LEPMLKSMAY INQQLSASAN RVAVINLKLQ DTKTSTGETE  840
VKFQVSRDTL GSMLRSMAYI REQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078722.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_011078721.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_011078720.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_011078719.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_011078718.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_011078717.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLF6HIV90.0F6HIV9_VITVI; Putative uncharacterized protein
STRINGVIT_13s0047g00330.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109