PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6529_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 261aa    MW: 28720.1 Da    PI: 6.0321
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6529_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011108130123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          ++C+ C + F ++  L  H++ H
  cra_locus_6529_iso_1_len_1625_ver_3 108 FPCNFCQRKFYSSQALGGHQNAH 130
                                          89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.33E-6106135No hitNo description
PROSITE profilePS5015711.094108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGLLKFDLEK AATSDDNSDI CSQVASNISV QEPYLLAPRV IVSDSSQVTD LSTPISSGPF  60
ELDLSLSFKS KTDELAGKDS IGISVSSTSE SSNEPTTQTT ATAAPRVFPC NFCQRKFYSS  120
QALGGHQNAH KRERTLAKRA MRMGIFSERY ANLASLPLHG SSFRSLIKTH SSMHPGFAPS  180
GRPLYFRTNA RFEQGYLTQP IYVEEEPELL WPGSFRQVAA DRDNSQPSFI LTGSSNSNLN  240
FLEVNPSLEK DELTPDLTLR L
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027079490.11e-114zinc finger protein 4-like
RefseqXP_027079491.11e-114zinc finger protein 4-like
SwissprotQ392631e-40ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A068TZJ21e-111A0A068TZJ2_COFCA; Uncharacterized protein
STRINGGLYMA14G39280.43e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]