PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6447_iso_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 498aa    MW: 51383.2 Da    PI: 6.2537
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6447_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.001195117123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          +kC +C+k +  +s+ k H + +
  cra_locus_6447_iso_5_len_2394_ver_3  95 WKCDKCSKKYAVQSDWKAHSKIC 117
                                          58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.3E-483116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.64E-590139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MPVDIDNSSA MNDSTASGEA SASSSGNQAA PPPKPAVKKK RNLPGMPDPD XXXXXXXXXX  60
XXXXXXXXXX XXXRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR  120
EYKCDCGTLF SRRDSFITHR AFCDALAEES AKTQTVEAPP SADTDPKLQS PASSPPPPPP  180
PPPAAEPAPP APPPCTAVIQ SSTLPIETPE EPENPNKNPT SPQILEEVSA MTTLTAGCSS  240
SSSSSCSGST TSSVFASLFA SSTATESLQS SSSGFTDLFR AVARPESTSE VIPSSSTEPI  300
SLCLATNQGS SIFGTAGQER RQYAPPPQPA LSATALLQKA AQIGAAATNA SLLRGFGIVS  360
SSSSTTGQQE WSGRPIESDN GLAAGLGLGL PCDGGSGLKE LMLGTPSVFG PKHTTLDLLG  420
LGMAAGAGPT GGLSALMTSI GGGLDVATAA ASFGGSEYTA KDLGRGSXHG XFSANQSILL  480
VVYGGRYEVA TDLAQKCT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3591156368Zinc finger protein JACKDAW
5b3h_F1e-3591156368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074557.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ71e-106IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A068U3D81e-174A0A068U3D8_COFCA; Uncharacterized protein
STRINGVIT_04s0023g01430.t011e-172(Vitis vinifera)
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]