PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6447_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 517aa    MW: 53016.7 Da    PI: 5.4723
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6447_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-056789123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         ++C++C+k F r  nL+ H r H
  cra_locus_6447_iso_4_len_2450_ver_3 67 FVCEICNKGFQRDQNLQLHRRGH 89
                                         89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PfamPF121718.3E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MPVDIDNSSA MNDSTASGEA SASSSGNQAA PPPKPAVKKK RNLPGMPDPD AEVIALSPKT  60
LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KDVKKRVYVC PEPTCVHHDP  120
SRALGDLTGR LIQRFVGLES INVIVGLCFQ GGIALSPTGL FXDALAEESA KTQTVEAPPS  180
ADTDPKLQSP ASSPPPPPPP PPAAEPAPPA PPPCTAVIQS STLPIETPEE PENPNKNPTS  240
PQILEEVSAM TTLTAGCSSS SSSSCSGSTT SSVFASLFAS STATESLQSS SSGFTDLFRA  300
VARPESTSEV IPSSSTEPIS LCLATNQGSS IFGTAGQERR QYAPPPQPAL SATALLQKAA  360
QIGAAATNAS LLRGFGIVSS SSSTTGQQEW SGRPIESDNG LAAGLGLGLP CDGGSGLKEL  420
MLGTPSVFGP KHTTLDLLGL GMAAGAGPTG GLSALMTSIG GGLDVATAAA SFGGSEYTAK  480
DLGRGSXHGX FSANQSILLV VYGGRYEVAT DLAQKCT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074557.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ71e-121IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLF6GWY30.0F6GWY3_VITVI; Uncharacterized protein
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]