PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6447_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 179aa    MW: 19614.5 Da    PI: 8.6912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6447_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000395117123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          +kC +C+k +  +s+ k H + +
  cra_locus_6447_iso_2_len_1080_ver_3  95 WKCDKCSKKYAVQSDWKAHSKIC 117
                                          58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-483116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.85E-591132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MPVDIDNSSA MNDSTASGEA SASSSGNQAA PPPKPAVKKK RNLPGMPDPD XXXXXXXXXX  60
XXXXXXXXXX XXXRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR  120
EYKCDCGTLF SRRDSFITHR AFCDALAEES AKTQTVEAPP SADTDPKLQS PAVLAVVEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3791156368Zinc finger protein JACKDAW
5b3h_F4e-3791156368Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022855799.17e-59protein indeterminate-domain 2-like
TrEMBLA0A068U3D84e-56A0A068U3D8_COFCA; Uncharacterized protein
TrEMBLA0A2G9G9825e-56A0A2G9G982_9LAMI; Ovo transcription factor
TrEMBLA0A438GID83e-56A0A438GID8_VITVI; Protein indeterminate-domain 1
TrEMBLF6GWY34e-56F6GWY3_VITVI; Uncharacterized protein
STRINGVIT_04s0023g01430.t016e-57(Vitis vinifera)