PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6447_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 136aa    MW: 15000.9 Da    PI: 10.2995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6447_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.4e-066789123
                                        EEETTTTEEESSHHHHHHHHHHT CS
                             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                        ++C++C+k F r  nL+ H r H
  cra_locus_6447_iso_1_len_949_ver_3 67 FVCEICNKGFQRDQNLQLHRRGH 89
                                        89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.32E-56590No hitNo description
Gene3DG3DSA:3.30.160.602.8E-66689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.4E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MPVDIDNSSA MNDSTASGEA SASSSGNQAA PPPKPAVKKK RNLPGMPDPD AEVIALSPKT  60
LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KDVKKRVYVC PEPTCVHHDP  120
SRALGDLTGR LIQRFX
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154669.19e-79PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-67IDD1_ARATH; Zinc finger protein ENHYDROUS
SwissprotQ9SCQ67e-68IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A1U8FMZ69e-74A0A1U8FMZ6_CAPAN; Protein indeterminate-domain 1
TrEMBLA0A2G3AAD89e-74A0A2G3AAD8_CAPAN; protein indeterminate-domain 1-like
TrEMBLA0A314Y3D88e-74A0A314Y3D8_PRUYE; Protein indeterminate-domain 2
TrEMBLA0A4D6LRJ96e-75A0A4D6LRJ9_VIGUN; Regulatory protein SWI5
STRINGEMJ055242e-74(Prunus persica)
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]