PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6393_iso_8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 256aa    MW: 29308.1 Da    PI: 9.6311
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6393_iso_8genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003499121223
                                          EETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                          +C+ C+++++++ +L  H +  H
  cra_locus_6393_iso_8_len_1277_ver_3  99 SCSVCSRVYPTSRLLSIHVSEvH 121
                                          6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.267196IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807396IPR007087Zinc finger, C2H2
SMARTSM003552.198121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100121IPR007087Zinc finger, C2H2
SMARTSM003550.42136161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
XPSMAMEVEV NTESLGFPYW RPIRRRLPPG SPFFRSGDIE RELLVKQVAL DLTEEEKQQI  60
RHMEDQESSK IFCPIVGCGA HLKSLDAFED HYMARHSASC SVCSRVYPTS RLLSIHVSEV  120
HDSFFQAKVA RGFPMYECLV EGCGVKLKNY KSRQQHLVDK HKFPTSFEFF KKAPPSKKQR  180
QKNQQKKSLA NTEEVSRTMQ IDRDATNDLV SAISKLSTSD TPSSISFGRR NTRGLTFVPR  240
AVQRDRRPDS SDEMKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176182KKQRQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270554.11e-133PREDICTED: zinc finger protein 511
TrEMBLA0A2R6RJX91e-132A0A2R6RJX9_ACTCH; Zinc finger protein
STRINGVIT_14s0068g01930.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022