PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6393_iso_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 236aa    MW: 26477 Da    PI: 9.9507
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6393_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000379101223
                                          EETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                          +C+ C+++++++ +L  H +  H
  cra_locus_6393_iso_5_len_1218_ver_3  79 SCSVCSRVYPTSRLLSIHVSEvH 101
                                          6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.265176IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805376IPR007087Zinc finger, C2H2
SMARTSM003552.178101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080101IPR007087Zinc finger, C2H2
SMARTSM003550.42116141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
XCTHGLPLPL EFRPGFPSYI TRTCASNCLS SLGHASKESM NLIFPAFGSK IFCPIVGCGA  60
HLKSLDAFED HYMARHSASC SVCSRVYPTS RLLSIHVSEV HDSFFQAKVA RGFPMYECLV  120
EGCGVKLKNY KSRQQHLVDK HKFPTSFEFF KKAPPSKKQR QKNQQKKSLA NTEEVSRTMQ  180
IDRDATNDLV SAISKLSTSD TPSSISFGRR NTRGLTFVPR AVQRDRRPDS SDEMKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162KKQRQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447049.11e-101zinc finger protein 511
RefseqXP_006470078.11e-101zinc finger protein 511
TrEMBLA0A2R6RJX91e-100A0A2R6RJX9_ACTCH; Zinc finger protein
STRINGXP_006470078.11e-100(Citrus sinensis)
STRINGXP_006447049.11e-100(Citrus clementina)