PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6393_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 167aa    MW: 19092.4 Da    PI: 10.6012
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6393_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000191032223
                                         EETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                                         +C+ C+++++++ +L  H +  H
  cra_locus_6393_iso_1_len_1011_ver_3 10 SCSVCSRVYPTSRLLSIHVSEvH 32
                                         6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.1932IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801132IPR007087Zinc finger, C2H2
SMARTSM003550.424772IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804972IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
XHYMARHSAS CSVCSRVYPT SRLLSIHVSE VHDSFFQAKV ARGFPMYECL VEGCGVKLKN  60
YKSRQQHLVD KHKFPTSFEF FKKAPPSKKQ RQKNQQKKSL ANTEEVSRTM QIDRDATNDL  120
VSAISKLSTS DTPSSISFGR RNTRGLTFVP RAVQRDRRPD SSDEMKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793KKQRQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447049.12e-89zinc finger protein 511
RefseqXP_006470078.12e-89zinc finger protein 511
TrEMBLV4W2X65e-88V4W2X6_9ROSI; Uncharacterized protein
STRINGXP_006470078.18e-89(Citrus sinensis)
STRINGXP_006447049.18e-89(Citrus clementina)