PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6296_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 1251aa    MW: 136609 Da    PI: 4.9209
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6296_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052416438223
                                          EETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                           C++C+  F+++++L +H+ + H
  cra_locus_6296_iso_3_len_4201_ver_3 416 HCEKCNSNFNSRDDLLQHQLSsH 438
                                          5******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.890.104.9E-4277335IPR001739Methyl-CpG DNA binding
PROSITE profilePS509829.775281353IPR001739Methyl-CpG DNA binding
SuperFamilySSF541717.19E-7287335IPR016177DNA-binding domain
PfamPF014295.4E-5289333IPR001739Methyl-CpG DNA binding
PROSITE profilePS5015711.448415443IPR007087Zinc finger, C2H2
SMARTSM003550.036415438IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280417438IPR007087Zinc finger, C2H2
PROSITE profilePS501579.265460487IPR007087Zinc finger, C2H2
SMARTSM003550.34460482IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280462482IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1251 aa     Download sequence    Send to blast
MASATVESVT ATTGSAPSDI PLRLDSIPTV DLQLLSQSEL YSLSLCSPSI FDPRRCDDVV  60
IPKIDRSVFN ESAGSRKQTY YRLRLARSSD AASASSSIRC RTPHLRPASH NPHPHFLETD  120
PENAENRQIL ALLKQLFGVD SSISVKDDSM EELVPVRVDF SDTMPQLANV VSTGQKRKRG  180
RPRKNENAAI LVENKLESQC VNDVPLATNQ ILVYENVEDK DKDIVNRDGI EVDLIQLGSM  240
EDPYEEELWR KTEGMGTEEQ LLEFLKGLNG QWASRRKKKR IVDASLFGNA LPKGWRLLLS  300
CKRKDGRVWL FCRRYISPNG RQFVSCKEIS AYLLSLRGIP DANQQICVQS NAGATATDKM  360
TTAITADASL PNEKREEKPL CQTMSPAVTS ASGNYDVQIT MMPGDPPAVQ VGENLHCEKC  420
NSNFNSRDDL LQHQLSSHRR RRPKNGESVT DGVIIRGGKY ECQFCHKTFD ERHRYNGHVG  480
SHMRNQVRNS AESRAAHVEE FLGTGSSDPL PHGNTIVQPA IGLESNVAAQ NVRSGSDDPP  540
NPCTDEQNGD SRDLNDYLGT VDNSMDVDVT KSKICFDSVT VLSNNENSNY CEASSGANVI  600
KNAVDGIEKS CNAQERSSDA CSPFSLDKPV DSDTNAITFV EPKISGSVSR SSNEQMESCD  660
IDLDGGDFSR TMGEFKLEEN KVVDDGTLFG LCDRNGGVND SGAIGYKQHD QSPSDIGEAN  720
GKSISTAAGS EQKIFSAGTM LAPSSDGKED GDRDRFGAFP GSTLEGGEHN QTGLCGSKGH  780
QSDKHAQEER GIGSSRIVPT WNETGNGTGM FNKEVSVGII EGHQQPKSSE SNLPSLSGFN  840
GSYGVEDYFN KVSTREVQQP KVNDVHNMRN NELVFSFSTG SGEIGTDATN KNKHEGGFEF  900
RAFFPPENGK VFSAENNGMS VQNHAGEESK KEPSGSVLLA QPRLAESSGE VYNVNKIFGT  960
QVDEHRSNII GNSKSHELCL AFSNQADSSG VELEKYGAKS FDIHSGINQS YGTQNNLNMG  1020
NVAPKEGRAF GIDLHGFSDK TSVFENNFNM VYPGRVWEEP KVDDGGNSGN KFMVGFGNSV  1080
PQPVEDVLAG SIWRTGEENL LRSDLTDPST PLIQSSNGFH TFDIISDKGH EGLFGVDHKY  1140
DCNSGFEGLT LGRSEPMEYS FMTAQSSNTL PGDSKGFSYN TDTQQGFDSP FWLGKDSLMQ  1200
NMTGRNQVPT VCVWCRNEFY QDPATSGSQT GAIGSICPAC NSKISQQFNV L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274279RRKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027093346.10.0uncharacterized protein LOC113713762
RefseqXP_027148869.10.0uncharacterized protein LOC113749366
TrEMBLA0A068TXS50.0A0A068TXS5_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78501619