PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_60730_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 105aa    MW: 11450.1 Da    PI: 8.9111
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_60730_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000331335123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         ++C+ C+k+F+++  L  H  +H
  cra_locus_60730_iso_1_len_312_ver_3 13 FECKACKKVFNSHQALGGHRASH 35
                                         89**************9999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-4637IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.17E-61039No hitNo description
PfamPF139121.6E-101337IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0761340IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
XNSGNSHSSE GLFECKACKK VFNSHQALGG HRASHKKVKG CYAAKQDQIM IDDAMAVAAD  60
HHEEHVITND HEEFFPHNSK STSSSLQASK FSPSSASASR RKSKX
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090189.12e-26uncharacterized protein LOC105170939
SwissprotO654992e-13ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A2G9HTX73e-24A0A2G9HTX7_9LAMI; Uncharacterized protein
STRINGXP_002511650.13e-24(Ricinus communis)
STRINGXP_002540465.11e-24(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243