PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5900_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 338aa    MW: 38026.4 Da    PI: 10.2901
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5900_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.61.5e-36291212103
                                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS
                         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 
                                          Fl+k+y++++d+++++++sws+++nsfvv++  efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++      
  cra_locus_5900_iso_1_len_2156_ver_3  29 FLSKTYDMVDDPATDSVVSWSKTNNSFVVWNVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR------ 96 
                                          9****************************************************************999...... PP

                                          TTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                         HSF_DNA-bind  76 ekiweFkhksFkkgkkellekikrkkse 103
                                             weF+++ F +g+k+ll++i r+ks+
  cra_locus_5900_iso_1_len_2156_ver_3  97 ---WEFANEGFLRGHKHLLKTISRRKST 121
                                          ...**********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3919113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-3525118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.5E-6225118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-212952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-3229118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-216779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-218092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006886Biological Processintracellular protein transport
GO:0016192Biological Processvesicle-mediated transport
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005484Molecular FunctionSNAP receptor activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
XGEASRARTA TRANSSSSSS QAPPPPTPFL SKTYDMVDDP ATDSVVSWSK TNNSFVVWNV  60
PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGHKH LLKTISRRKS  120
THVQGQQQPT QVQNTSTGSC VEVGKFGLDE EVERLKRDKN VLMQELVRLR QQQQATDQQL  180
QTVGQRVHLM EQRQQQMMSF LAKAMQSPGF MAQLVHPQND SNRRISGINK KRRLPNQDEE  240
NLAGNHGATL PDGQIVKFQP QMNEAAKAVF RQILKINASS RLEQKINHAN GYLIDGAHTS  300
ANALESSSAS SRISGVTLSE VLPSVQPHVA SYVFELYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-262212112123Heat shock factor protein 1
5d5u_B9e-262911829129Heat shock factor protein 1
5d5v_B9e-262911829129Heat shock factor protein 1
5d5v_D9e-262911829129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439999.11e-171PREDICTED: heat stress transcription factor A-1b-like
SwissprotQ84T611e-138HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A022RZ991e-165A0A022RZ99_ERYGU; Uncharacterized protein
STRINGSolyc03g097120.2.11e-150(Solanum lycopersicum)