PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5592_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 391aa    MW: 43587.9 Da    PI: 8.6949
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5592_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.4e-07157180123
                                          EEETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                          y+Cp+Cg+ F+ + +L++H++  H
  cra_locus_5592_iso_3_len_1641_ver_3 157 YPCPICGEIFPKPNLLEQHQSIkH 180
                                          99******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.785157185IPR007087Zinc finger, C2H2
SMARTSM003550.0056157180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280159180IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-13182390No hitNo description
Gene3DG3DSA:3.90.228.103.2E-5193294IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.108.7E-5325390IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MASLSSLFSS FLSLLLLIHL ACFNFTTNSA YRQSKKRKIS DPFSSNINRA GHHQSSPPPS  60
SRRLKLTTPK ALSSSWSFLK RLFSSKSSPS TVKSSSPTRP LNKPSSIPSP CSSTRSLTQP  120
IILPDNNHLS DSSLERTALE SDISSTQSFF PLRNDIYPCP ICGEIFPKPN LLEQHQSIKH  180
AVSELIDGDT GKNIVKIIFK TGWPENRMKN PIIHRILKIH NSPKILTRFE EYRECVMSKA  240
VRNGVARCVA DGNELLRFHC TTFLCDLGQN GNSDLCNQQY CSVCGIIKSG FSHKMDGIST  300
LSTSWRAHVS IPEEIEEEFK FMHVKRAMLV CRVIAGRVGC DPEIPDKDDP GFDSLVGCRG  360
TGNHTRLDDE DELLVFNPRA VLPCFAIVYT V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630930.11e-169PREDICTED: uncharacterized protein LOC104120793
TrEMBLA0A068ULR41e-167A0A068ULR4_COFCA; Uncharacterized protein
TrEMBLA0A1S4BRD71e-167A0A1S4BRD7_TOBAC; uncharacterized protein LOC107811098
TrEMBLA0A1U7W3C21e-167A0A1U7W3C2_NICSY; uncharacterized protein LOC104223368
STRINGXP_009630930.11e-168(Nicotiana tomentosiformis)