PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5487_iso_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 902aa    MW: 101803 Da    PI: 6.5394
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5487_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.34e-1655126188
                                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 
                                          +fY+eYA++vGFs+r+ + ++s  +g +t r+f Cs+ g +++  ++              C+a l+++++ +g
  cra_locus_5487_iso_6_len_3105_ver_3  55 SFYDEYARRVGFSTRVGHYSRS--SGMVTAREFLCSRDGLKRRAGDS--------------CDALLRIELRGHG 112
                                          5****************99888..999*************9998877..............************* PP

                                 FAR1  75 kwevtkleleHnHe 88 
                                          kw+vt++++eH+H+
  cra_locus_5487_iso_6_len_3105_ver_3 113 KWVVTRFVKEHSHS 126
                                          *************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1255127IPR004330FAR1 DNA binding domain
PfamPF105511.2E-24266357IPR018289MULE transposase domain
PfamPF044346.5E-11540578IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.214544580IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-8555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MDVEVIDSED GNMGQRGSIT DDGDDDPHEI GELNEDGLVE PHVGMEFDSE DSAKSFYDEY  60
ARRVGFSTRV GHYSRSSGMV TAREFLCSRD GLKRRAGDSC DALLRIELRG HGKWVVTRFV  120
KEHSHSTVNP GKVQSLRPRR HFAGAVKHNA ETYSGTGTVP SGVMYVSMDG NCIPADTNRR  180
AKSSSVEPNH TVRSLAPVSS CSSRQTGRKR TLGRDAQNLL DYFKKMQAEN PGFYYAIQLD  240
EDNHMANVFW ADARSRTAYS HFGDAVTLDT RYRVNQYKVP FTPFTGVNHH GQTILFACAL  300
LLDESEATFL WLFKTFLAAM NDRAPVSITT DKDKAIQMSA AQVFPEARHC INKWDVLREG  360
QERMAHVCHV HPSFQVELYN CINLTQTVEE FESSWDSIIN KYDLKRNDWL QSIYNIRRQW  420
IPVYFHDSFF AAISPNQGFE SSFFDGYVNQ QTTLPLFFRQ YERAIESSFE KEVEADSDTT  480
RTSPVLKTPS PMEKQAASFY TRRIFSKFQE ELVETFVYTA NRIDGDGVIS TFRVAKFEDD  540
QKAYIVSLNV ADMKASCSCQ MFEFSGILCR HVLTVFTVTN VLTLPSHYIL KRWTRHARTG  600
FGSEDCGEVH CHESLTTRYN SLCREAIRYA EEGAITPETY DIVLSALKEA GKKIAAVKKN  660
VAKAVPPSLH GVGYDDHRTL IYAPDTTPLL WPRQDEMIKR FNLNDVGAST QSGDMNLPRM  720
APTSVQRGDG ASDNMLILPC LKSMTWVMEN KNSTPANRVA VINLKLQDYS RNPSGESEVK  780
FHLSKVTLEP MLRSMAFISE QLSTPANRVA VINLKLQDTE ATSGESEVKF QVSRDTLGAM  840
LRSMAYIREQ LSIPEKGING GCYWSWAIQC GSEIWVCCLA VSTFGTATYR KEDHNFDVGY  900
GY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027081555.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_027081562.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2R6P7X50.0A0A2R6P7X5_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGEOY342830.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]