PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_54367_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 95aa    MW: 11152.7 Da    PI: 5.8533
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_54367_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind92.16.4e-291994286
                                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTT CS
                         HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskek 77
                                         Fl k+y ++ed+ ++e++sw+ +g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++        
  cra_locus_54367_iso_1_len_336_ver_3 19 FLLKTYMLVEDPVTDEVMSWNGEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATNR-------- 86
                                         9****************************************************************998........ PP

                                         SEEEEESXX CS
                         HSF_DNA-bind 78 iweFkhksF 86
                                          weF+++ F
  cra_locus_54367_iso_1_len_336_ver_3 87 -WEFSNDMF 94
                                         .99999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-331295IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.03E-281595IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.9E-361595IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.1E-261995IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-181942IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-185769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MECEKGFAEY VRKASPPPFL LKTYMLVEDP VTDEVMSWNG EGTAFVVWQP AEFARDLLPT  60
LFKHSNFSSF VRQLNTYGFR KVATNRWEFS NDMFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-1917831884Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898083.15e-58PREDICTED: heat stress transcription factor B-3-like
RefseqXP_015898109.16e-58PREDICTED: heat stress transcription factor B-3-like
RefseqXP_015898214.16e-58PREDICTED: heat stress transcription factor B-3-like
SwissprotO222301e-45HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A068V0E27e-59A0A068V0E2_COFCA; Uncharacterized protein
STRINGVIT_08s0007g08750.t016e-57(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113