PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5375_iso_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 143aa    MW: 17007.2 Da    PI: 7.2822
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5375_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016104127123
                                         EEETTTTEEESSHHHHHHHHHH.T CS
                             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                         ++C++C+k F+   +L +H  + H
  cra_locus_5375_iso_5_len_632_ver_3 104 WRCGYCKKIFRAEKYLDQHFDNrH 127
                                         58*****************77666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280106127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
XFILLLVVLS LPVSVYSISS LSQSNLQGTE HPNSRSLKQE DPHVHEVHCS RERSRAAWKV  60
IEEYLMPFVE KEKYQISPQC RLHPSNDLFR DQEEHKIHVD VNEWRCGYCK KIFRAEKYLD  120
QHFDNRHYNL LNAVGQLVLL FIW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123000.15e-69uncharacterized protein LOC113739838
RefseqXP_027168293.15e-69uncharacterized protein LOC113768223
TrEMBLA0A068V3A71e-67A0A068V3A7_COFCA; Uncharacterized protein
STRINGPOPTR_0015s10200.12e-60(Populus trichocarpa)