PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5375_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 268aa    MW: 30774.2 Da    PI: 9.1189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5375_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004104127123
                                          EEETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                          ++C++C+k F+   +L +H  + H
  cra_locus_5375_iso_3_len_1189_ver_3 104 WRCGYCKKIFRAEKYLDQHFDNrH 127
                                          58*****************77666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280106127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
XFILLLVVLS LPVSVYSISS LSQSNLQGTE HPNSRSLKQE DPHVHEVHCS RERSRAAWKV  60
IEEYLMPFVE KEKYQISPQC RLHPSNDLFR DQEEHKIHVD VNEWRCGYCK KIFRAEKYLD  120
QHFDNRHYNL LNANNGKCLA EVCGALHCDL MMDSAPRKSK CNPAAATKNR HLFAADSCFP  180
VNQGPSAAHL HDFFLRQFCD SHTCSGGKKP FSKGGKKHTS VLYLAASVLI LMLLPIFYLL  240
VYLYQREMQK GTQELKRIPK LGRKTKPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027168293.11e-157uncharacterized protein LOC113768223
TrEMBLA0A068V3A71e-155A0A068V3A7_COFCA; Uncharacterized protein
STRINGXP_009616977.11e-140(Nicotiana tomentosiformis)