PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5316_iso_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 788aa    MW: 92389 Da    PI: 7.8798
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5316_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.24.9e-12154230390
                                 FAR1   3 YneYAkevGFsvrkskskkskrngei.tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 
                                          Y +YA++ GFs++k++ +k   +g + + +t  C +  k++   ++          +r++C a+l   ++++g 
  cra_locus_5316_iso_6_len_3055_ver_3 154 YLAYARDRGFSITKKSASKG--TGCVrKYQTISCDRGRKSAAYVRT----------KRINCPARLSAILRENGM 215
                                          99***********9998776..554404566778777766665555..........9***************** PP

                                 FAR1  76 wevtkleleHnHela 90 
                                          w+v+k++++HnHel 
  cra_locus_5316_iso_6_len_3055_ver_3 216 WQVSKIVENHNHELD 230
                                          *************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-9154231IPR004330FAR1 DNA binding domain
PfamPF105512.0E-20352440IPR018289MULE transposase domain
PROSITE profilePS509669.495645681IPR007527Zinc finger, SWIM-type
PfamPF044344.6E-4654680IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011656683IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
XKDHCCFELL LAVIVSGTKT RQTSCRKSQC PKRQNRRLET LTIDASLKQQ PPNVPLIVAS  60
RVVVLLELFD TEELIXFILR SLKICRKIQF VNFLKQNQIV NPEREMNRMN QPEESEEQIQ  120
ITDVEIQQVF HQEKAEEPRV GTFYNNIEEL FDSYLAYARD RGFSITKKSA SKGTGCVRKY  180
QTISCDRGRK SAAYVRTKRI NCPARLSAIL RENGMWQVSK IVENHNHELD PSMSRFMLAH  240
RSINLNMKRK LEAKNIAKTR PNKSVRPLEV QVGGPDKLDC LPRDCRNDVE SVRRLKISGG  300
DVDCINRMFL SMQQENSDFF HLIHADEEGR VDNVFWVHPR SRAAYEEFND AVSIDSTFLI  360
KDPFVSIIGV NHHGHPILLG SALISHEDTE TYKWVFRTWL AAMGGQPPIA VMTDQCESMR  420
SAIKEVMPNT IQSYYIFHIL CKFPEKFRGL REYTEVKNEF KAVVYDSLTK AMFETNWNQF  480
IAXIWVESNQ WLGKLYNERE LWVPVYVNHI FWAGMSTQRS ENIHGFFDGY IHSNSTLEQF  540
VEQYEIAIRH KVEKEDASDF KSKGSVVKCL TVYDWEIQFQ EAYTNEMFEK LQTEIRRMWY  600
CHLHVMGDKV GNELAEENFD EEGYEKFKIL EKVLLNAEYV KDFVYSVLYK EEGCFLKCNC  660
RSFESKGLLC AHILIVASMK DVRRFHERYL LRRWRKDVHR RYKRIFFDEG YPHMTIEFAK  720
FKELEKIFND VADIALSSHE KTLKFKQILE SSKDKLLNWN LVESITPNDS EVHVESMHRK  780
ERKGSIGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036PKRQNRR