PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_52574_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 96aa    MW: 10962.2 Da    PI: 10.1503
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_52574_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-084773127
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHH CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktI 27
                                         +g+WT++Ed++l+++++ +G g+W+  
  cra_locus_52574_iso_1_len_782_ver_3 47 KGAWTKDEDLRLINYIRVHGEGCWRPL 73
                                         79********************88654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-113876IPR009057Homeodomain-like
PROSITE profilePS512949.0194294IPR017930Myb domain
SuperFamilySSF466893.95E-74277IPR009057Homeodomain-like
PfamPF002491.4E-64772IPR001005SANT/Myb domain
CDDcd001673.92E-44971No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
XFQSNSNHPS SSSLPQPFLS PYRIGKIKSS KKLMGRSPCC EKAHTNKGAW TKDEDLRLIN  60
YIRVHGEGCW RPLPKAAXIA EMWKKLQIEM DKLLEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462415.11e-23PREDICTED: transcription repressor MYB6-like
SwissprotP813952e-24MYB30_ANTMA; Myb-related protein 330
TrEMBLQ8H2711e-23Q8H271_G
TrEMBLA0A0D2VDI51e-23A0A0D2VDI5_G
STRINGPGSC0003DMT4000804272e-22(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1548477