PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_48041_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 213aa    MW: 24111.7 Da    PI: 9.2314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_48041_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-056082123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         y+C+ C+k F+++  L  H++ H
  cra_locus_48041_iso_1_len_637_ver_3 60 YPCKFCSKEFTNSQALGGHQNAH 82
                                         99******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-55886IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.05E-75887No hitNo description
PROSITE profilePS5015711.6556087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
DKRLKLFGFE IDAYQKSSTL SPAVSDQESV NSSDSSLPLP EKAHQENGVV SKPEEELKKY  60
PCKFCSKEFT NSQALGGHQN AHRKERLKKK RMQTQAKRAT FNSNLISFLN RNAVIYHCST  120
PCFGDLSFCS GKCIPGKSHI CFNTQNQCQK IDGRNLFCSR PPPAVSHFNF WANDNTSPXN  180
LSNCRHQRWG NMSCDGPLHQ NSVVVHILVH RYX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122114.14e-33uncharacterized protein LOC113739067
TrEMBLA0A068VHJ42e-31A0A068VHJ4_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130