PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4762_iso_3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 200aa    MW: 23315.6 Da    PI: 8.4924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
                                         ET..TTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                                         C+   Cgk+F +   L++H   H
  cra_locus_4762_iso_3_len_962_ver_3  78 CSyeGCGKTFIDAGALRKHSHIH 100
                                         77779**************7766 PP

                                         EEET..TTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                         y C+  +Cgk F ++s LkrH   H
  cra_locus_4762_iso_3_len_962_ver_3 105 YICHyeNCGKKFLDSSKLKRHFLIH 129
                                         89*******************8877 PP

                                         EEET..TTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                         ++Cp   Cgk Fs   nL++H++tH
  cra_locus_4762_iso_3_len_962_ver_3 135 FVCPheGCGKAFSLDFNLRSHMKTH 159
                                         89**********************9 PP

                                         EEET..TTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                         + Cp  dCgk++ + + Lk+Hi++H
  cra_locus_4762_iso_3_len_962_ver_3 165 HICPyaDCGKRYAHEYKLKNHISSH 189
                                         68**********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA: finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78376105IPR007087Zinc finger, C2H2
SMARTSM003550.003276100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028078100IPR007087Zinc finger, C2H2
SuperFamilySSF576671.77E-879129No hitNo description
Gene3DG3DSA: finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.013105129IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.066105134IPR007087Zinc finger, C2H2
PROSITE patternPS000280107129IPR007087Zinc finger, C2H2
SuperFamilySSF576674.78E-15116169No hitNo description
Gene3DG3DSA: finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.1E-4135159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.695135164IPR007087Zinc finger, C2H2
PROSITE patternPS000280137159IPR007087Zinc finger, C2H2
Gene3DG3DSA: finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0069165189IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995165189IPR007087Zinc finger, C2H2
PROSITE patternPS000280167190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
3D Structure ? help Back to Top
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-36691892117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850433.11e-128PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L33e-97YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A022QG141e-127A0A022QG14_ERYGU; Uncharacterized protein
STRINGMigut.B00804.1.p1e-127(Erythranthe guttata)
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323