PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4591_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 249aa    MW: 27303.5 Da    PI: 6.2475
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4591_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002796118123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          ++C++C + F ++  L  H++ H
  cra_locus_4591_iso_2_len_1048_ver_3  96 FSCNYCRRKFYSSQALGGHQNAH 118
                                          89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-694123No hitNo description
PROSITE profilePS5015711.38596123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MKPLNTNLES EEDSEVSSQV ASNVSTQEIS PGPSKDSTTS SPCLTESIDL ERDLRPITLD  60
LTLGFNKNEG VQLQGMSEPS GEVIPHPPAS AVSRVFSCNY CRRKFYSSQA LGGHQNAHKR  120
ERTLAKRAMR MNMLSDRYAS LASLPLHGSA YRSLGVEAHA SMHQRIIPPE RQPFNGIRGG  180
ARFEQGYFGL PVYMEDDEVE LYWPGSFRQV EGVGSNMGLN SGQSSNINFV AAAPTPRTDS  240
SLPDLNLKL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027099753.11e-135zinc finger protein 4-like
RefseqXP_027099754.11e-135zinc finger protein 4-like
RefseqXP_027099755.11e-135zinc finger protein 4-like
SwissprotQ392631e-46ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A068UAD41e-134A0A068UAD4_COFCA; Uncharacterized protein
STRINGXP_009768278.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]