PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_45433_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 281aa    MW: 30459.7 Da    PI: 8.3454
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_45433_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00013355223
                                         EETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                                          C+ Cg++F+  ++L++H+   H
  cra_locus_45433_iso_1_len_858_ver_3 33 ACSQCGEVFPKIESLQHHQAIrH 55
                                         6******************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002803255IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0163260IPR007087Zinc finger, C2H2
SuperFamilySSF563991.25E-2357277No hitNo description
Gene3DG3DSA:3.90.228.101.2E-1158277IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
SRGIQFRKLS GCYECHTIVD PTRYPLPRTT ICACSQCGEV FPKIESLQHH QAIRHAVSEL  60
GPEDSSRNIV EIIFKSSWLK KDNPICSIER ILKVHNTQRT IQRFEDCRDA VKIRANNNTK  120
KNPRCAADGN ELLRFHCTTL TCSLGARGSS SLCGSVPGCG VCTIIRHGFQ GNKSSGVRTT  180
ASSGRAHDCL GIPAAEAEGG RSSRAMLVCR VIAGRVKRVV DDTGAEAAPE EDAGASLAAP  240
LGSYDSLAGY AGIYSNLEEL YVFNPRAILP CFVVIYKALE S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027094431.11e-177uncharacterized protein LOC113714649
RefseqXP_027148620.11e-177uncharacterized protein LOC113749150
TrEMBLA0A068UFR51e-174A0A068UFR5_COFCA; Uncharacterized protein
STRINGVIT_18s0001g14130.t011e-161(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334